Package index • StoatPlot

All functions

combine_chunk_phenotype_covars(): Combine the allele counts for snarl with phenotype and covariables
genotype_boxplots(): Genotype vs phenotype boxplots
import_assoc(): Import association results from STOAT
import_genotype_chunk(): Import a chunk of the snarl genotypes for a queried region
make_report(): General a summary report.
manhattan_plot(): Manhattan plot with all tested snarls
path_length_distribution(): Path Length Distribution Plots for STOAT
plot_pvalue_hist(): P-value Histogram for STOAT GWAS Results
preprocess_test_table(): Prepare the phenotype/genotype/covariate table before a test
qq_plot(): Q-Q plot of the p-values
snarl_type_histogram(): Dot Plot of snarl type histogram
summary_stoat(): Summary of STOAT's results