Combine the allele counts for snarl with phenotype and covariables — combine_chunk_phenotype

Combine a phenotype and potentially some covariables with the allele count information from import_genotype_chunk. If paths are given to phenotypr or covariables, will try to read the files.

Usage

combine_chunk_phenotype_covars(
  snarl_ac,
  phenotype,
  covariables = NULL,
  gene_name = NULL
)

Arguments

snarl_ac: data.frame with the allele counts for the snarl
phenotype: Either a data.frame with the phenotype for each sample, or the path to the phenotype file
covariables: Either a data.frame with the covariables for each sample, or the path to the covariables file
gene_name: gene of interest, if the phenotype is a matrix of gene expression.

Value

a data.frame with the new phenotype and covariables columns